PIDA-mediated synthesis of oxazoles through oxidative cycloisomerization of propargylamides

PIDA [phenyliodine(III) diacetate] in AcOH or AcOH-HFIP (hexafluoroisopropanol) efficiently promotes the formation of 2,5-disubstituted oxazoles via the oxidative cycloisomerization of propargylamide derivatives.     

Detecting coupled collective motions in protein by independent subspace analysis

Protein dynamics evolves in a high-dimensional space, comprising aharmonic, strongly correlated motional modes. Such correlation often plays an important role in analyzing protein function. In order to identify significantly correlated collective motions, here we employ independent subspace analysis based on the subspace joint approximate diagonalization of eigenmatrices algorithm for the analysis of molecular dynamics (MD) simulation trajectories. From the 100 ns MD simulation of T4 lysozyme, we extract several independent subspaces in each of which collective modes are significantly correlated, and identify the other modes as independent. This method successfully detects the modes along which long-tailed non-Gaussian probability distributions are obtained. Based on the time cross-correlation analysis, we identified a series of events among domain motions and more localized motions in the protein, indicating the connection between the functionally relevant phenomena which have been independently revealed by experiments.     

A novel total synthesis of the bioactive poly-substituted carbazole alkaloid carbazomadurin A

A new total synthesis of the neuronal cell-protecting carbazole alkaloid carbazomadurin A is described. The key step was an allene-mediated electrocyclic reaction involving an indole [b]-bond for the construction of a highly substituted carbazole ring. The E-alkenyl side chain at the C1 position of carbazole was introduced between O-triflate and alkenyl pinacol borate using the Suzuki-Miyaura reaction. SEM groups were cleaved with TBAF and the formyl group was reduced to provide carbazomadurin A.     

Ion-pair structure of vaporized ionic liquid studied by matrix-isolation FTIR spectroscopy with DFT calculations: a case of 1-ethyl-3-methylimidazolium trifluoromethanesulfonate

The matrix-isolation infrared spectrum of a thermally evaporated ionic liquid, 1-ethyl-3-methylimidazolium trifluoromethanesulfonate ([Emim][OTf]), was measured by FTIR spectroscopy and analyzed with the aid of DFT calculations. The main chemical species in the observed IR spectrum was mainly identified as the 1:1 cation-anion pair, which corresponds to the second stable ion-pair structure bonded through five hydrogen bonds between three O atoms of the anion side and four H atoms of the cation.     

Highly durable Pd metal catalysts for the oxygen reduction reaction in fuel cells; coverage of Pd metal with silica

Pd cathode catalysts for polymer electrolyte fuel cells have been covered with silica layers a few nanometres thick. The silica-coated Pd catalysts showed high activity and excellent durability for the oxygen reduction under the severe cathode conditions of PEFCs, while Pd catalysts without silica-coating were seriously deactivated under the same conditions. The coverage of Pd metal with silica prevents the diffusion of Pd species out of the silica layers.     

Counter-current chromatographic separation of nucleic acid constituents with a hydrophilic solvent system

Nucleic acid constituents such as nucleobases, nucleosides and nucleotides were separated by counter-current chromatography using type J coil planet centrifuge. The separation was performed with a hydrophilic solvent system composed of 1-propanol/800 mM potassium phosphate buffer (pH 7.4) (1:1, v/v) by eluting the lower aqueous phase at a flow-rate of 0.5 ml/min. Eight selected nucleic acid constituents (4.0 mg, 0.5 mg of each), uridine monophosphate (UMP), adenosine monophosphate (AMP), deoxyadenosine monophosphate (dAMP), uridine, urasile, deoxy uridine, adenosine and adenine were well resolved within 160 min.     

Design and synthesis of phthalimide-based fluorescent liver x receptor antagonists

Based on our structure-activity relationship study of liver X receptor (LXR) ligands, we designed and synthesized fluorescent LXR antagonists containing an unsubstituted or substituted amino group on a phthalimide unit.     

3D atomic imaging by internal-detector electron holography

A method of internal-detector electron holography is the time-reversed version of photoelectron holography. Using an energy-dispersive x-ray detector, an electron gun, and a computer-controllable sample stage, we measured a multiple-energy hologram of the atomic arrangement around the Ti atom in SrTiO3 by recording the characteristic Ti Kα x-ray spectra for different electron beam angles and wavelengths. A real-space image was obtained by using a fitting-based reconstruction algorithm. 3D atomic images of the elements Sr, Ti, and O in SrTiO3 were clearly visualized. The present work reveals that internal-detector electron holography has great potential for reproducing 3D atomic arrangements, even for light elements.